Preprocess data before debris manual gating — pre

This function selects a random sample and reads the FCS files, remove zeros and beads and then adds a row ID column and writes a new FCS file. It uses files on current working directory. Files should have same parameters desc/column names.

pre_gate(
  sample_size = 20,
  use.current.model = TRUE,
  model_beads = model_beads,
  alg_bd = "RF"
)

Arguments

sample_size	A numeric vector. Number of samples (files) to be used.
use.current.model	Logical. If `FALSE`, an object of class `train` can be passed to the argument `model_beads`. Default is `TRUE`.
model_beads	Object of class `train`. Needed if `use.current.model` is `FALSE`.
alg_bd	A character vector with the name of the algorithm used to train `model_beads`. It can be 'RF' for Random Forest or 'XGB' for XGBoost.