rm_zeros.RdThis function removes events with 0 expression of mandatory makers (e.g. DNA intercalator) as well as cells with 0 expression in all optional markers (e.g. CD4, CD8, EpCAM, CD31, etc.). Mandatory markers are those which should be expressed for an event to be considered valid. Optional markers are those that allow cell type identification, therefore their absolute abscence make the event invalid because it cannot be identified as a specific cell type.
rm_zeros(df, mand_idx, opt_idx, ...)
| df | An object of class |
|---|---|
| opt_idx | A vector with the column indexes for the optional markers. |
| mand_inx | A vector with the column indexes for the mandadory markers. |
Returns a data.frame with the invalid events already removed.